Computational Strategies Towards Improved Protein Function by MVK Karthik, Pratyoosh Shukla

By MVK Karthik, Pratyoosh Shukla

This short studies at the interaction of an amino-acid mutation in the direction of substrate which can result in more desirable results on mutant. those results must be given attention within the engineering strategies of protein balance and additional exploration of such studying are required to supply novel indication for choice of an enzymes. There are only a few experiences displaying such good, power effective version in the direction of more advantageous protein functionality prediction screening in-silico constitution dependent mutagenesis of xylanases from Thermomyces lanuginosus​

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Computational Strategies Towards Improved Protein Function Prophecy of Xylanases from Thermomyces lanuginosus

This short experiences at the interaction of an amino-acid mutation in the direction of substrate which may result in more advantageous results on mutant. those results must be given attention within the engineering strategies of protein balance and extra exploration of such studying are required to supply novel indication for collection of an enzymes.

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Proteins 60(2):224–231 Sen T, Kloczkowski A, Jernigan R, Yan C, Honavar V, Ho K, Wang CZ, Ihm Y, Cao H, Gu X, Dobbs D (2004) Predicting binding sites of hydrolase-inhibitor complexes by combining several methods. BMC Bioinform 5:205 Shoemaker B, Panchenko A (2007) Deciphering protein–protein interactions. part II. computational methods to predict protein and domain interaction partners. PLoS Comput Biol 3(4):e43 Smith G, Sternberg M, Bates P (2005) The relationship between the flexibility of proteins and their conformational states on forming protein–protein complexes with an application to protein–protein docking.

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Nucleic Acids Res 25:3389–3402 Edgar, Robert C (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792–1797 Capra J, Singh M (2007) Predicting functionally important residues from sequence conservation. Discrete Appl Math 88:83–102 Moll M and Kavraki LE (2008) Matching of structural motifs using hashing on residue labels and geometric filtering for protein function prediction. The Seventh Annual International Conference on Computational Systems Bioinformatics, Stanford, CA Hawkins T, Luban S, Kihara D (2006) Enhanced automated function prediction using distantly related sequences and contextual association by PFP.

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